OccupancyBarplot.summ: Occupancy Summary Barplots

In vanddraabe: Identification and Statistical Analysis of Conserved Waters Near Proteins

Description

Occupancy summary barplots for the PDB structures. The plots are faceted and displays the binned occupancy values for all the structures. The counts are presented on a log10 scale.

Usage

OccupancyBarplot.summ(data)

Arguments

data	The results from the CleanProteinStructures() function. Will use the binned occupancy data.

Author(s)

Emilio Xavier Esposito [e-mail]

See Also

Other plots: BoundWaterEnvPlots, BoundWaterEnvSummaryPlot, BvalueBarplot.summ, BvalueBarplot, ClusterSummaryPlots, MobNormBvalEvalPlots, MobilityBarplot.summ, MobilityBarplot, OccupancyBarplot, nBvalueBarplot, normBvalueBarplot.summ

Examples

  ## Not run: 
  OccupancyBarplot.summ(data)

  ##----- multiple pages
  library(ggforce)
  occ.barplots.summary <- OccupancyBarplot.summ(data)
  num.pages <- ceiling(nrow(data$occupancy.counts) / 10)

  pdf(file="multiple_pages.pdf", height=11, width=8.5)
  for (page in seq_len(num.pages)) {
    print(occ.barplots.summary +
          ggforce::facet_wrap_paginate(~PDBid,
                                       ncol = 2, nrow = 5, page = page) )
  }
  dev.off()
  
## End(Not run)

vanddraabe documentation built on June 8, 2019, 1:03 a.m.