Description Usage Arguments Details Author(s) References See Also Examples
Occupancy Barplots for Cluster with at least 50% Conservation
OccupancyBarplot(data, passed.waters = TRUE)
Logical indicator to plot results for waters passing
Constructs a barplot with corresponding density plot for the mean occupancy value for all water within each cluster with at least 50% water conservation. Clusters with 50 to 69% water conseration are dark red, clusters with 70 to 79% conservation are red, 80 to 89% conservation are light blue, 90 to 99% conservation are blue, and 100% conservation (waters from all structures) are dark blue.
This plot was inspired by Figure 1 of Sanschagrin and Kuhn (1998).
Emilio Xavier Esposito emilio@exeResearch.com
Paul C Sanschagrin and Leslie A Kuhn. Cluster analysis of consensus water sites in thrombin and trypsin shows conservation between serine proteases and contributions to ligand specificity. Protein Science, 1998, 7 (10), pp 2054-2064. DOI: 10.1002/pro.5560071002 PMID: 9792092 WatCH webpage
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## Not run: occupancy.plot <- OccupancyBarplot(data=thrombin10.conservedWaters, passed.waters=TRUE) ## End(Not run)
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