meddra_: Sample of Meddra.
In vigicaen: 'VigiBase' Pharmacovigilance Database Toolbox

meddra_

R Documentation

Sample of Meddra.

Description

Anonymized data from MedDRA, used to illustrate the package examples and vignettes. You can find term codes related to colitis, pneumonitis, hepatitis, a SMQ of embolisms. Compounds are meddra_, smq_list_, smq_content_ and smq_list_content_. Create dedicated .parquet files using tb_meddra(). See examples in get_llt_soc and get_llt_smq

Usage

data(meddra_)

smq_list_content_

smq_list_

smq_content_

Format

meddra_ is a data.table with 15 variables and 677 rows.

The ⁠*_code⁠ columns. Integers. MedDRA code for the given term.
The ⁠*_name⁠ columns. Characters. The name of the term.
soc_abbrev Character. The abbreviation of the SOC.
null_field Logical. Empty column.
pt_soc_code Integer. The preferred term code of the SOC itself.
primary_soc_fg Character. Whether the SOC is primary for this code. "Y" or "N", Yes or No.
empty_col Logical. Empty column.

smq_list_ is a data.table with 9 variables and 11 rows. It is the list of SMQ.

smq_code Integer. The code of the SMQ.
smq_name Character. The name of the SMQ.
smq_level Integer. The hierarchical level of the SMQ.
smq_description Character. The description of the SMQ.
smq_source Character. The source of the SMQ.
smq_note Character. Additional note on the SMQ.
MedDRA_version Numeric. The version of MedDRA.
status Character. The status of the SMQ (active or not)
smq_algorithm Character. Whether the SMQ is algorithmic or not.
empty_col Logical. Empty column.

smq_content_ is a data.table with 9 variables and 3386 rows. It is the content of each SMQ.

smq_code Integer. The code of the SMQ.
term_code Integer. The low-level term code.
term_level Integer. The hierarchical level of the term.
term_scope Integer. The scope of the term (narrow 2 or broad 1)
term_category Character. In algorithmic SMQs, the category of the term.
term_weight Integer. The weight of the term (algorithmic SMQs).
term_status Integer. The status of the term (active or not)
term_addition_version Numeric. The version of the term addition.
term_last_modified_version Numeric. The last MedDRA version the term was modified.
empty_col Logical. Empty column.

smq_list_content_ is a data.table with 19 variables and 3386 rows. It is a fusion of smq_list and smq_content, as created with tb_meddra().

smq_code Integer. The code of the SMQ.
smq_name Character. The name of the SMQ.
smq_level Integer. The hierarchical level of the SMQ.
smq_description Character. The description of the SMQ.
smq_source Character. The source of the SMQ.
smq_note Character. Additional note on the SMQ.
MedDRA_version Numeric. The version of MedDRA.
status Character. The status of the SMQ (active or not)
smq_algorithm Character. Whether the SMQ is algorithmic or not.
empty_col.x Logical. Empty column.
term_code Integer. The low-level term code.
term_level Integer. The hierarchical level of the term.
term_scope Integer. The scope of the term (narrow 2 or broad 1)
term_category Character. In algorithmic SMQs, the category of the term.
term_weight Integer. The weight of the term (algorithmic SMQs).
term_status Integer. The status of the term (active or not)
term_addition_version Numeric. The version of the term addition.
term_last_modified_version Numeric. The last MedDRA version the term was modified.
empty_col.y Logical. Empty column.