xQTLquery_sampleByTissue: Query details of samples by tissue name
In xQTLbiolinks: An R Package for Integrative Analysis of Quantitative Trait Locus Data of 'xQTL'
xQTLquery_sampleByTissue R Documentation
Query details of samples by tissue name
Description
Query details of samples by tissue name
Usage
xQTLquery_sampleByTissue(
tissueSiteDetail = "Liver",
dataType = "RNASEQ",
recordPerChunk = 200,
pathologyNotesCategories = FALSE
)
Arguments
tissueSiteDetail
(character) details of tissues in GTEx can be listed using tissueSiteDetailGTExv8 or tissueSiteDetailGTExv7
dataType
A character string. Options: "RNASEQ" (default), "WGS", "WES", "OMNI".
recordPerChunk
(integer) number of records fetched per request (default: 200).
pathologyNotesCategories
Default: pathologyNotes info is ignored.
Value
returen a data.table object of samples' information
Examples
sampleInfo <- xQTLquery_sampleByTissue("Brain - Amygdala" )
sampleInfo <- xQTLquery_sampleByTissue(tissueSiteDetail="Liver", pathologyNotesCategories=TRUE)
xQTLbiolinks documentation built on Sept. 15, 2023, 1:06 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| xQTLquery_sampleByTissue | R Documentation |
Query details of samples by tissue name
Description
Query details of samples by tissue name
Usage
xQTLquery_sampleByTissue(
tissueSiteDetail = "Liver",
dataType = "RNASEQ",
recordPerChunk = 200,
pathologyNotesCategories = FALSE
)
Arguments
tissueSiteDetail |
(character) details of tissues in GTEx can be listed using |
dataType |
A character string. Options: "RNASEQ" (default), "WGS", "WES", "OMNI". |
recordPerChunk |
(integer) number of records fetched per request (default: 200). |
pathologyNotesCategories |
Default: pathologyNotes info is ignored. |
Value
returen a data.table object of samples' information
Examples
sampleInfo <- xQTLquery_sampleByTissue("Brain - Amygdala" )
sampleInfo <- xQTLquery_sampleByTissue(tissueSiteDetail="Liver", pathologyNotesCategories=TRUE)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.