xQTLquery_sqtlSig | R Documentation |
Only GTEx v8 is supported.
xQTLquery_sqtlSig(
variantName = "",
genes = "",
variantType = "auto",
geneType = "auto",
tissueSiteDetail = ""
)
variantName |
(character) name of variant, dbsnp ID and variant id is supported, eg. "rs138420351" and "chr17_7796745_C_T_b38". |
genes |
(character string or a character vector) gene symbol or gencode id (versioned or unversioned are both supported). |
variantType |
(character) options: "auto", "snpId" or "variantId". Default: "auto". |
geneType |
(character) options: "auto","geneSymbol" or "gencodeId". Default: "auto". |
tissueSiteDetail |
(character) details of tissues in GTEx can be listed using |
A data.table object.
# Query sQTL associations with rsid:
xQTLquery_sqtlSig(variantName="rs201327123")
xQTLquery_sqtlSig(variantName="chr1_14677_G_A_b38", tissueSiteDetail="Whole Blood")
# Query sQTL associations with gene symbol and gencode ID:
xQTLquery_sqtlSig(genes="ENSG00000141510.16", tissueSiteDetail="Lung" )
xQTLquery_sqtlSig(genes=c("ATAD3B", "MLH1"))
# Query sQTL associations with the variant-genes pair:
xQTLquery_sqtlSig(variantName="rs201327123", genes=c("WASH7P","RP11-206L10.2"))
xQTLquery_sqtlSig(variantName="chr17_7465085_A_G_b38", genes="TP53", tissueSiteDetail="Lung")
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.