xQTLquery_tissue: Query details for a specified tissue
In xQTLbiolinks: An R Package for Integrative Analysis of Quantitative Trait Locus Data of 'xQTL'
xQTLquery_tissue R Documentation
Query details for a specified tissue
Description
Information includes tissue IDs, number of RNA-Seq samples, number of RNA-Seq samples with genotype, number of expressed genes, number of eGenes. Also includes tissueSiteDetail ID, name, abbreviation, uberon ID, and standard tissue colors. TissueSiteDetails are grouped by TissueSites. By default, this service reports from the latest GTEx release.
Usage
xQTLquery_tissue(tissueName = "")
Arguments
tissueName
Tissue name, tissue ID or tissue site name. Default return all tissues' information. Can be choonse from tissueSiteDetailGTExv8 or tissueSiteDetailGTExv7
Value
A data.table object.
Examples
tissueAll <- xQTLquery_tissue() # fetch all tissues
Brain <- xQTLquery_tissue("Brain")
xQTLbiolinks documentation built on Sept. 15, 2023, 1:06 a.m.
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| xQTLquery_tissue | R Documentation |
Query details for a specified tissue
Description
Information includes tissue IDs, number of RNA-Seq samples, number of RNA-Seq samples with genotype, number of expressed genes, number of eGenes. Also includes tissueSiteDetail ID, name, abbreviation, uberon ID, and standard tissue colors. TissueSiteDetails are grouped by TissueSites. By default, this service reports from the latest GTEx release.
Usage
xQTLquery_tissue(tissueName = "")
Arguments
tissueName |
Tissue name, tissue ID or tissue site name. Default return all tissues' information. Can be choonse from |
Value
A data.table object.
Examples
tissueAll <- xQTLquery_tissue() # fetch all tissues
Brain <- xQTLquery_tissue("Brain")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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