xQTLvisual_genoBox: Boxplot of values stratified by genotypes with customized...

In xQTLbiolinks: An R Package for Integrative Analysis of Quantitative Trait Locus Data of 'xQTL'

Boxplot of values stratified by genotypes with customized data

Description

Boxplot of values stratified by genotypes with customized data

Usage

xQTLvisual_genoBox(
  genoDT,
  axis_text_size = 1.3,
  axis_title_size = 1.3,
  title_size = 1.4,
  xlab_text = "Genotypes",
  ylab_text = "Normalized expression",
  ylim_v = NULL,
  title_text = "",
  jitter_color = NULL
)

Arguments

genoDT	(Data.framt) including two columns, "value" and "genotypes"
axis_text_size	(numberic) text size of the axis labels
axis_title_size	(numberic) text size of the axis title
title_size	(numberic) text size of the title of the plot
xlab_text	(character) Lable for x-axis
ylab_text	(character) Lable for x-axis
ylim_v	(numeric vector) Set scale limits
title_text	(character) Title of the plot
jitter_color	(A character vector) Set the point color.

Value

A ggplot object.

Examples

url1 <- "http://bioinfo.szbl.ac.cn/xQTL_biolinks/xqtl_data/eqtl/eqtlExpLabel.txt"
genoDT <- data.table::fread(url1)
box_plot <- xQTLvisual_genoBox(genoDT, title_size=1.6, title_text="Geno-Exp association" )

xQTLbiolinks documentation built on Sept. 15, 2023, 1:06 a.m.