xQTLvisual_genoBox | R Documentation |
Boxplot of values stratified by genotypes with customized data
xQTLvisual_genoBox(
genoDT,
axis_text_size = 1.3,
axis_title_size = 1.3,
title_size = 1.4,
xlab_text = "Genotypes",
ylab_text = "Normalized expression",
ylim_v = NULL,
title_text = "",
jitter_color = NULL
)
genoDT |
(Data.framt) including two columns, "value" and "genotypes" |
axis_text_size |
(numberic) text size of the axis labels |
axis_title_size |
(numberic) text size of the axis title |
title_size |
(numberic) text size of the title of the plot |
xlab_text |
(character) Lable for x-axis |
ylab_text |
(character) Lable for x-axis |
ylim_v |
(numeric vector) Set scale limits |
title_text |
(character) Title of the plot |
jitter_color |
(A character vector) Set the point color. |
A ggplot object.
url1 <- "http://bioinfo.szbl.ac.cn/xQTL_biolinks/xqtl_data/eqtl/eqtlExpLabel.txt"
genoDT <- data.table::fread(url1)
box_plot <- xQTLvisual_genoBox(genoDT, title_size=1.6, title_text="Geno-Exp association" )
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