xQTLvisual_locusCombine | R Documentation |
This function is rebuilt from locuscompare.R
(https://github.com/boxiangliu/locuscomparer/blob/master/R/locuscompare.R).
xQTLvisual_locusCombine(
gwasEqtldata,
posRange = "",
population = "EUR",
highlightSnp = "",
legend_position = "bottomright",
snpLD = NULL
)
gwasEqtldata |
A data.frame or a data.table that including signals from both GWAS and eQTL. Five columns are required (arbitrary column names is supported):
|
posRange |
Genome range that you want to visualize (e.g. "chr6:3e7-7e7"). Default is the region that covers all snps. |
population |
One of the 5 popuations from 1000 Genomes: 'AFR', 'AMR', 'EAS', 'EUR', and 'SAS'. |
highlightSnp |
Default is the snp that with lowest p-value. |
legend_position |
(string, optional) Either 'bottomright','topright', or 'topleft'. Default: 'bottomright'. |
snpLD |
A data.frame object of LD matrix. Default is null. |
A ggplot object.
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