Man pages for AdaptiveCompBio/EOS
Commonly used functions for the EOS project
| calc_bias | Function for calculating LOQ |
| calc_precision | Function for calculating MRD precision |
| CICS_model | Common Intercepts Common Slope Common Intercepts Common... |
| CoxPH_Diagnostics | Cox-PH model assumptions This function outputs a bunch of... |
| createKeywordTrees | Function for creating keyword trees Create keyword trees used... |
| createKeywordTrees-EOS_Report-method | createKeywordTrees |
| determineCdr3Index | Function for calculating cdr3 index |
| determineCdr3Index-EOS_Report-method | determineCdr3Index |
| determineNdnValues | Function for calculating NDN base pairs |
| determineNdnValues-EOS_Report-method | determineNdnValues |
| EOS_Report-class | Object for calibrating and matching sequences |
| findConsensusSequences | Find consensus sequences Find consensus sequences within EOS... |
| find_linearity | Function for finding linear MRD range |
| find_LOD | Function for calculating LOD |
| find_LOQ | Function for calculating LOQ |
| getLocus | Function for calculating gene locus |
| getLocus-EOS_Report-method | getLocus |
| getReportMetadata | Extract metadata from report Extract metadata from the header... |
| getReportSeqsByTag | Read in data and select by tag Helper function for reading in... |
| matchQuerySequenceWithTargetSequence | Match sequences between objects Match sequences in one object... |
| matchReportToConsensus | Match Sequences to a Consensus Find exact matching sequences... |
| processReport | processReport Calls functions in the following order:... |
| SICS_model | Separate Intercepts Common Slope Separate Intercepts Common... |
| SISS_model | Separate Intercepts Separate Slopes Separate Intercepts... |
| splitSequenceIntoSubstrings | Function for splitting sequence into subsequences This... |
| splitSequenceIntoSubstrings-EOS_Report-method | splitSequenceIntoSubstrings |
| stability_model_selection | Function for selecting stability models |
| trimCloneSequence | Function for generating trimmed sequences |
| trimCloneSequence-EOS_Report-numeric-method | trimCloneSequence |
