matchQuerySequenceWithTargetSequence: Match sequences between objects Match sequences in one object...
In AdaptiveCompBio/EOS: Commonly used functions for the EOS project

Match sequences between objects Match sequences in one object to sequences in another object using keyword hash trees

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matchQuerySequenceWithTargetSequence(obj_query, obj_target,
  no_shm_allowance = T, max_adj_mut_igkl = 0, max_adj_mut_igh = 2,
  ndn_cost = 1.05, include_report_data = F)

`obj_query`	The query EOS report object
`obj_target`	The target EOS report object (i.e., the one with the trees)
`no_shm_allowance`	Should mutations be allowed?
`max_adj_mut_igkl`	If the EOS report query doesn't have a pre-specified max adjusted mutation value for a sequence, use this default for IGKL sequences
`max_adj_mut_igh`	If the EOS report query doesn't have a pre-specified max adjusted mutation value for a sequence, use this default for IGH/IGH_D sequences
`ndn_cost`	Modified cost for an ndn base pair mismatch
`include_report_data`	If TRUE, append all EOS fields to the data.frame of matched sequences