find_linearity: Function for finding linear MRD range
In AdaptiveCompBio/EOS: Commonly used functions for the EOS project

Description Usage Arguments Value See Also

Function for finding linear MRD range

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find_linearity(MRD, input_cancer_cells, max_deviation_threshold = 0.05,
  log = TRUE, log_offset = 1e-06, linearity.plot = TRUE,
  log_deviation = T)

`MRD`	The measured MRD values
`input_cancer_cells`	The pre-specified input. Note: can be frequency or any other input value
`log`	Boolean for log10-transforming input_cancer_cells, default TRUE
`log_offset`	log offset for transformation to avoid log(0), default 1e-6
`linearity.plot`	If TRUE, returns a ggplot of the Total Error fit
`log_deviation`	If TRUE and if log==T, calculate deviation in log space. Otherwise, convert deviance to linear space.
`max_deviance_threshold`	Maximum deviation threshold from linearity

Returns a list containing linear_range_min, linear_range_max and deviation within the linear range. If linearity.plot == TRUE, also contains a ggplot of the linear range.

PRO-00091

AdaptiveCompBio/EOS documentation built on May 26, 2019, 6:37 a.m.