EOS_Report-class: Object for calibrating and matching sequences

In AdaptiveCompBio/EOS: Commonly used functions for the EOS project

Description

Object for calibrating and matching sequences

Slots

trimmed_sequence

trimmed sequence

locus

locus determined through getLocus function

cdr3Index

calculated cdr3 index

cdr3Length

calculated cdr3 length

ndnIndex

calculated ndn index

ndnLength

calculated ndn length

left_sequence

left split sequence based on cdr3 index

right_sequence

right split sequence based on cdr3 index

left_ndn_start

left ndn base start

left_ndn_end

left ndn base end

right_ndn_start

left ndn base start

right_ndn_end

left ndn base end

left_hash

tree hash of left sequence

right_hash

tree hash of right sequence

data

The original CSV report data

See Also

See examples/PRO-00243_calibration_example.r

Examples

new("EOS_Report", data=Datain)

AdaptiveCompBio/EOS documentation built on May 26, 2019, 6:37 a.m.