collate_expressions: Extract expression information from parsed FCS data
In AhmedMehdiLab/WebCytoMetry: Web Interface for viewing flow cytometry data
Description
Usage
Arguments
Value
Examples
Description
Extract expression information from parsed FCS data
Usage
1
collate_expressions(flow_item, cluster = NULL, min_cells = 0)
Arguments
flow_item
output of import_fcs_path or rescale_item
cluster
optional: value from do_cluster
min_cells
optional: minimum number of cells per file
Value
expression information
Examples
1
2
3
4
flow_item <- import_fcs_path(system.file("extdata", "fcs", "KatJanin", package = "WebCytoMetry"))
cluster <- do_cluster(flow_item, flow_item$panel$antigen)
xprc_info <- collate_expressions(flow_item, cluster$sce)
AhmedMehdiLab/WebCytoMetry documentation built on Feb. 20, 2022, 12:34 a.m.
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Description Usage Arguments Value Examples
Description
Extract expression information from parsed FCS data
Usage
1 | collate_expressions(flow_item, cluster = NULL, min_cells = 0)
|
Arguments
flow_item |
output of |
cluster |
optional: value from |
min_cells |
optional: minimum number of cells per file |
Value
expression information
Examples
1 2 3 4 | flow_item <- import_fcs_path(system.file("extdata", "fcs", "KatJanin", package = "WebCytoMetry"))
cluster <- do_cluster(flow_item, flow_item$panel$antigen)
xprc_info <- collate_expressions(flow_item, cluster$sce)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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