prep_radviz: Project expressions into a two-dimensional circular plot
In AhmedMehdiLab/WebCytoMetry: Web Interface for viewing flow cytometry data
Description
Usage
Arguments
Value
Examples
Description
Project expressions into a two-dimensional circular plot
Usage
1
prep_radviz(xpsc_info, channels)
Arguments
xpsc_info
output of rescale_expressions
channels
character: selected channels
Value
see do.radviz
Examples
1
2
3
4
5
6
7
flow_item <- import_fcs_path(system.file("extdata", "fcs", "KatJanin", package = "WebCytoMetry"))
cluster <- do_cluster(flow_item, flow_item$panel$antigen)
xprc_info <- collate_expressions(flow_item, cluster$sce)
xpsc_info <- rescale_expressions(xprc_info)
radviz <- prep_radviz(xpsc_info, flow_item$panel$antigen)
plot(radviz)
AhmedMehdiLab/WebCytoMetry documentation built on Feb. 20, 2022, 12:34 a.m.
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Description Usage Arguments Value Examples
Description
Project expressions into a two-dimensional circular plot
Usage
1 | prep_radviz(xpsc_info, channels)
|
Arguments
xpsc_info |
output of |
channels |
character: selected channels |
Value
see do.radviz
Examples
1 2 3 4 5 6 7 | flow_item <- import_fcs_path(system.file("extdata", "fcs", "KatJanin", package = "WebCytoMetry"))
cluster <- do_cluster(flow_item, flow_item$panel$antigen)
xprc_info <- collate_expressions(flow_item, cluster$sce)
xpsc_info <- rescale_expressions(xprc_info)
radviz <- prep_radviz(xpsc_info, flow_item$panel$antigen)
plot(radviz)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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