compute_lmer: Calculate lmer
In AhmedMehdiLab/WebCytoMetry: Web Interface for viewing flow cytometry data

Description Usage Arguments Value Examples

Calculate lmer

1	compute_lmer(xprc_info, meta, formula, min_files = 7)

`xprc_info`	output of `collate_expressions`
`meta`	"metan": selected metaclustering method
`formula`	character: formula expression
`min_files`	optional: minimum files per cluster

list: lmer results per cluster per channel

flow_item <- import_fcs_path(system.file("extdata", "fcs", "KatJanin", package = "WebCytoMetry"))
cluster <- do_cluster(flow_item, flow_item$panel$antigen)
xprc_info <- collate_expressions(flow_item, cluster$sce)

lmer_list <- compute_lmer(xprc_info, "meta6", "median ~ strain + (1|strain)")