compute_results: Collate computation results
In AhmedMehdiLab/WebCytoMetry: Web Interface for viewing flow cytometry data

Description Usage Arguments Value Examples

Collate computation results

1	compute_results(results, hypothesis)

`results`	output of `compute_glmm` or `compute_lmer`
`hypothesis`	character: hypothesis to test

tibble: results

flow_item <- import_fcs_path(system.file("extdata", "fcs", "KatJanin", package = "WebCytoMetry"))
cluster <- do_cluster(flow_item, flow_item$panel$antigen)
xprc_info <- collate_expressions(flow_item, cluster$sce)

glmm_list <- compute_glmm(xprc_info, "meta6", "n ~ strain + offset(logTotal)")
lmer_list <- compute_lmer(xprc_info, "meta6", "median ~ strain + (1|strain)")

glmm_data <- compute_results(glmm_list, "strainE7=0")
lmer_data <- compute_results(lmer_list, "strainE7=0")