compute_glmm: Compute GLMM ADMB

In AhmedMehdiLab/WebCytoMetry: Web Interface for viewing flow cytometry data

Description

Compute GLMM ADMB

Usage

compute_glmm(xprc_info, meta, formula, min_cells = 0)

Arguments

xprc_info	output of collate_expressions
meta	"metan": selected metaclustering method
formula	character: formula expression
min_cells	optional integer: minimum cells per cluster

Value

list: GLMM ADMB results per cluster

Examples

flow_item <- import_fcs_path(system.file("extdata", "fcs", "KatJanin", package = "WebCytoMetry"))
cluster <- do_cluster(flow_item, flow_item$panel$antigen)
xprc_info <- collate_expressions(flow_item, cluster$sce)

glmm_list <- compute_glmm(xprc_info, "meta6", "n ~ strain + offset(logTotal)")

AhmedMehdiLab/WebCytoMetry documentation built on Feb. 20, 2022, 12:34 a.m.