do_cluster: Perform clustering on parsed FCS data

In AhmedMehdiLab/WebCytoMetry: Web Interface for viewing flow cytometry data

Description

Perform clustering on parsed FCS data

Usage

do_cluster(flow_item, channels, grid_x = 10, grid_y = 10, clusters = 20)

Arguments

flow_item	output of import_fcs_path
channels	character: channels to consider
grid_x	optional integer: number of columns of self-organising map
grid_y	optional integer: number of rows of self-organising map
clusters	optional integer: number of clusters to generate

Value

sce see cluster

som see FlowSOM

Examples

flow_item <- import_fcs_path(system.file("extdata", "fcs", "KatJanin", package = "WebCytoMetry"))
flow_item <- rescale_item(flow_item, flow_item$panel$fcs_colname)

cluster <- do_cluster(flow_item, flow_item$panel$antigen)

AhmedMehdiLab/WebCytoMetry documentation built on Feb. 20, 2022, 12:34 a.m.