Man pages for AlexJanse/cMut
Identify Clustered Single Nucleotide Mutations and Link Them to Mutational Patterns
| addClusterTableComment | addClusterTableComment |
| addDistance | addDistance |
| addIdentTableComment | addIdentTableComment |
| addLinkPatterns | addLinkPatterns |
| addShuffleMutationComment | addShuffleMutationComment |
| callLinkPatterns | callLinkPatterns |
| callSearchclusterPatterns | callSearchclusterPatterns |
| checkLinkPatternsParameters | checkLinkPatternsParameters |
| checkParametersShuffleMutations | checkParametersShuffleMutations |
| compare | compare |
| compareContext | compareContext |
| compareNucs | compareNucs |
| convertFactor | convertFactor |
| createGroupTable | createGroupTable |
| createIdentTable | createIdentTable |
| createRandomMutations | createRandomMutations |
| createRandomTable | createRandomTable |
| createShuffleTable | createShuffleTable |
| createSummaryPatterns | createSummaryPatterns |
| dnaAlphabet | DNA Alphabet |
| formatClusterMutations | formatClusterMutations |
| fuseSurroundings | fuseSurroundings |
| getAlphaMatches | getAlphaMatches |
| getClusterId | getClusterId |
| getClusterType | getClusterType |
| getNnuc | getNnuc |
| getPatternIntersect | getPatternIntersect |
| getRef | getRef |
| getRefData | getRefData |
| getRevComTable | getRevComTable |
| getReverseComplement | getReverseComplement |
| getSearchPatterns | getSearchPatterns |
| getSummaryPatterns | getSummaryPatterns |
| groupClusters | groupClusters |
| identifyClusters | identifyClusters |
| linkPatterns | linkPatterns |
| mutationPatterns | Mutation patterns of mutators |
| nucToSymbol | nucToSymbol |
| searchClusterPatterns | searchClusterPatterns |
| setdiff.data.frame | setdiff.data.frame |
| shuffleMutations | shuffleMutations |
| shuffleParallel | shuffleParallel |
| summarizeBootstrap | summarizeBootstrap |
| testDataSet | A test dataset |
