getRefData: getRefData

In AlexJanse/cMut: Identify Clustered Single Nucleotide Mutations and Link Them to Mutational Patterns

Description

Function to get the reference nucleotides of a mutation.

Usage

getRefData(data, sizeSur, lenChrom, refGenomeHg19)

Arguments

data	Table with the chromosome, start information
sizeSur	A number with the amount of nucleotides there has to be around the mutation.
lenChrom	vector with the different size of the chromosomes
refGenomeHg19	A Boolean to tell if the preferred reference genome has to be Hg19. Hg38 will be used when refGenome = FALSE.

Value

A string with the surrounding and mutated position reference nucleotides of a mutation. Each part separated with "-"

AlexJanse/cMut documentation built on May 25, 2019, 4 a.m.