createRandomTable: createRandomTable

In AlexJanse/cMut: Identify Clustered Single Nucleotide Mutations and Link Them to Mutational Patterns

Description

Function to build the random mutation table and call supporting functions.

Usage

createRandomTable(nMut, sampleName, sizeSur, refGenomeHg19, useChrom,
  lenChrom)

Arguments

nMut	The number of mutations that needed to be generated.
sampleName	A name for the test sample.
sizeSur	A number with the amount of nucleotides left and right of the mutation. (e.g. sizeSur = 2 –> "CC.GT")
refGenomeHg19	A Boolean to tell if the preferred reference genome has to be Hg19. Hg38 will be used when refGenome = FALSE.
useChrom	A vector with the chromosomes that are used. Make sure that the names are notated as e.g. "chr1".
lenChrom	vector with the length of the chromosomes

Value

A table with random mutations

AlexJanse/cMut documentation built on May 25, 2019, 4 a.m.