View source: R/getSearchPatterns.R
A function to get the reverse complement of the sent pattern table
1 2 | getRevComTable(table, refHeader, altHeader, contextHeader = NULL,
idHeader, renameReverse)
|
table |
Table were the reverse complement is needed |
refHeader |
Contains the name of the column with the reference nucleotides. |
altHeader |
Contains the name of the column with the alternative nucleotides. |
contextHeader |
A string with the name of the column with the context.
The data inside this column is e.g. "C.G" hereby stands the "." for the
location of the mutation. What symbol is used to describe this location is
arbitrary but be sure to adjust the |
idHeader |
name of the column with the mutation IDs |
renameReverse |
A Boolean if the id of the process needs to be renamed.
This has the effect on the cMut functions that it will no longer treat the
reverse complement and non reverse complement as the same. This parameter
will irrelevant if |
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