compareContext: compareContext

In AlexJanse/cMut: Identify Clustered Single Nucleotide Mutations and Link Them to Mutational Patterns

Description

Function to compare nucleotides context

Usage

compareContext(searchContext, findContext, mutationSymbol, alphabet,
  searchMutationSymbol)

Arguments

searchContext	A string with a context (e.g. C.G) This one will act as the known mutation context for linkPatterns function.
findContext	A string with a context (e.g. C.C)
mutationSymbol	A character that stands for the mutation nucleotide (e.g. "." for C.G)
alphabet	A tibble with the nucleotides and their symbols
searchMutationSymbol	A string with symbol that stands for the mutated nucleotide location in the column of the searchContextHeader. (e.g. "." in "G.C")

Value

Boolean if the contexts match or not

AlexJanse/cMut documentation built on May 25, 2019, 4 a.m.