Description Usage Arguments Note See Also
View source: R/getSearchPatterns.R
A function to get the default search pattern table
1 2 | getSearchPatterns(reverse = TRUE, renameReverse = FALSE,
asTibble = TRUE)
|
reverse |
A Boolean if the reverse complementend also needed to be added. |
renameReverse |
A Boolean if the id of the process needs to be renamed. This has the effect on the cMut functions that it will no longer treat the reverse complement and non reverse complement as the same. |
asTibble |
A Boolean if the returned table needs to be a tibble. Else it will sent a data.frame. |
Please note that if there are patterns where the reverse complement is
the same as the original sequence then the reverse complement won't be
made. This is done to avoid double counting when renameReverse =
TRUE
is used.
See mutationPatterns
help page for full description
about the columns and values.
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