Man pages for AlexeiSleptcov/aggi
Agilent arrays analisys (aggy)
| chrmap | Map location |
| commonSeg | Calculate common CNA statistic |
| convertCGHcall | Convert MAlist to CGHcall |
| DLRSpread | Derivative log ratio spread |
| findOutliners | Find outliners in arrays |
| fixArrays | Slope correction intra-array |
| ggenomeplot | Genome plot |
| gplotArray | Plot array |
| gplotDendro | Plot dendrogramm for Agilent microarray data |
| gplotDensities | Plot Arrays Densities Plot the density of values for multiple... |
| gplotKMeans | Plot clustering MDS for Agilent microarray data |
| gplotMA | MA-plot: plot differences versus averages for Agilent... |
| gplotOutliners | Plot outliners in array |
| gplotRC | Plot Row&Column |
| gplotSNP | Plot SNP distribution |
| limarg | Limarg |
| makeArrays | Make arrays |
| makeSmall | Make small array |
| makeTargets | Make targets object |
| noiseReductionCGH | Noise reduction for aCGH |
| readAgilent | Read agilent files |
| readGenePix | Read genepix files |
| rmOutliners | Remove Outliners |
| runCBS | Multicore Circular Binary Segmentation |
| segmByCluster | Multicore Genome Segmentation Program |
| statCNA | simple CNA statistic |
| thrCalc | Calculate threshold |
| thrCBS | Detection CNA |
