gplotKMeans: Plot clustering MDS for Agilent microarray data

Description Usage Arguments

Description

Clustering MDS by K-Means clustering algorithm.

Usage

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gplotKMeans(data, centers = 2, methodDist = "euclidean", groups = NULL,
  getresult = FALSE, old = FALSE, ...)

Arguments

data

microarray data. Only for RGlist, MAlist or ELits class objects.

centers

either the number of clusters, say k, or a set initial (distinct) cluster centers. If a number, a random set of (distinct) rows in x is chosen as initial centres. See kmeans. Default: 2.

methodDist

method for Distance Matrix Computation. See dist. Default: "euclidean".

groups

forms by groups. Only if argument old is FALSE.

getresult

print result K-Means clustering

old

if TRUE draw by plot, else ggplot. Default:FALSE


AlexeiSleptcov/aggi documentation built on May 5, 2019, 4:53 a.m.