readGenePix: Read genepix files

In AlexeiSleptcov/aggi: Agilent arrays analisys (aggy)

Description

Read GenePix grp files.

Usage

readGenePix(targets = NULL, path = getwd(), custom.data = NULL,
  custom.ann = NULL)

Arguments

targets	GenePix's files. GPR format files only.
path	filepath, where GP-files are stored. Default: getwd().
custom.data	custom data. For example c(E = "F532 Median", Eb = "F532 MedianBG")
custom.ann	custom annotation. For example c(Row="Row", Col="Column")

Details

Targets object must be class data.frame, and have two required column name (eg.: "array1", "array2") and filenames (eg. "2802860_12158125.gpr").

See Also

readAgilent

Examples

# targets <- read.table("targets.txt", header = TRUE, stringsAsFactors = FALSE)
# MyArrays <- readGenePix(targets)

AlexeiSleptcov/aggi documentation built on May 5, 2019, 4:53 a.m.