API for AlexisHardy/DNAModAnnot
Toolbox for DNA Modifications filtering and annotation
| Global functions | |
|---|---|
| .AddModMotifPctToDf | Man page Source code |
| .CalculateNLx | Man page Source code |
| .DrawFdrEst | Man page Source code |
| .DrawFdrSegmentsXYAxis | Man page Source code |
| .DrawPolygonRange | Man page Source code |
| .EstimateFdr | Man page Source code |
| .ExportBamForGviz | Man page Source code |
| .ExportBigwigForGviz | Man page Source code |
| .ExportFastaForGviz | Man page Source code |
| .GetCountsByDist | Man page Source code |
| .GetCumsumTableParamByMotif | Man page Source code |
| .GetModBaseCountsCategories | Man page Source code |
| .GetPosDistFromFeaturePos | Man page Source code |
| .IncludeModPosInMot | Man page Source code |
| .rescale | Man page Source code |
| AdaptedIdeogramTrackWithoutBandsData | Man page Source code |
| AddToModBasePropDistFromFeaturePlot | Man page Source code |
| DrawBarplotBothStrands | Man page Source code |
| DrawContigCumulLength | Man page Source code |
| DrawDistriHistBox | Man page Source code |
| DrawFdrEstList | Man page Source code |
| DrawLogoPosNegAxes | Man page Source code |
| DrawModBaseCountsWithinFeature | Man page Source code |
| DrawModBasePropByFeature | Man page Source code |
| DrawModBasePropDistFromFeature | Man page Source code |
| DrawModLogo | Man page Source code |
| DrawParamPerModBaseCategories | Man page Source code |
| ExportFilesForGViz | Man page Source code |
| ExtractListModPosByModMotif | Man page Source code |
| FiltContig | Man page Source code |
| FiltDeepSignal | Man page Source code |
| FiltFdrBased | Man page Source code |
| FiltPacBio | Man page Source code |
| FiltParam | Man page Source code |
| GetAssemblyReport | Man page Source code |
| GetContigCumulLength | Man page Source code |
| GetDistFromFeaturePos | Man page Source code |
| GetFdrBasedThreshLimit | Man page Source code |
| GetFdrEstListByThresh | Man page Source code |
| GetGRangesWindowSeqandParam | Man page Source code |
| GetGenomeGRanges | Man page Source code |
| GetGposCenterFromGRanges | Man page Source code |
| GetListCountsByDist | Man page Source code |
| GetMeanParamByContig | Man page Source code |
| GetModBaseCountsByFeature | Man page Source code |
| GetModBaseCountsWithinFeature | Man page Source code |
| GetModRatioByContig | Man page Source code |
| GetModReportDeepSignal | Man page Source code |
| GetModReportPacBio | Man page Source code |
| GetSeqPctByContig | Man page Source code |
| ImportBamExtendedAnnotationTrack | Man page Source code |
| ImportDeepSignalModFrequency | Man page Source code |
| ImportPacBioCSV | Man page Source code |
| ImportPacBioGFF | Man page Source code |
| PredictMissingAnnotation | Man page Source code |
| addLetter | Man page Source code |
| letterA | Man page Source code |
| letterC | Man page Source code |
| letterG | Man page Source code |
| letterT | Man page Source code |
| letterU | Man page Source code |
