ImportBamExtendedAnnotationTrack: ImportBamExtendedAnnotationTrack Function (ModAnnot)
In AlexisHardy/DNAModAnnot: Toolbox for DNA Modifications filtering and annotation
ImportBamExtendedAnnotationTrack R Documentation
ImportBamExtendedAnnotationTrack Function (ModAnnot)
Description
Subfunction to import a bam file for displaying using Gviz package
while retrieving the content of the "Xa" optional field (will be retrieved as "tag" field).
(See Gviz package documentation to see how to use it while making tracks)
After making the AnnotationTrack,
in order to allow the names of the genomic features to be displayed, the "mapping" sub-list of
the generated annotation track must be completed with the new "id" and "group" values chosen while making the annotationTrack.
Example: trackAnnotation@mapping <- list(id="tag", group="tag")
Usage
ImportBamExtendedAnnotationTrack(file, selection)
AlexisHardy/DNAModAnnot documentation built on Feb. 27, 2023, 12:03 a.m.
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| ImportBamExtendedAnnotationTrack | R Documentation |
ImportBamExtendedAnnotationTrack Function (ModAnnot)
Description
Subfunction to import a bam file for displaying using Gviz package while retrieving the content of the "Xa" optional field (will be retrieved as "tag" field). (See Gviz package documentation to see how to use it while making tracks) After making the AnnotationTrack, in order to allow the names of the genomic features to be displayed, the "mapping" sub-list of the generated annotation track must be completed with the new "id" and "group" values chosen while making the annotationTrack. Example: trackAnnotation@mapping <- list(id="tag", group="tag")
Usage
ImportBamExtendedAnnotationTrack(file, selection)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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