Man pages for AlexisHardy/DNAModAnnot
Toolbox for DNA Modifications filtering and annotation
| AdaptedIdeogramTrackWithoutBandsData | AdaptedIdeogramTrackWithoutBandsData Function (ModAnnot) |
| addLetter | addLetter Function from seqLogo package (GloModAn) |
| AddToModBasePropDistFromFeaturePlot | AddToModBasePropDistFromFeaturePlot Function (ModAnnot) |
| dot-AddModMotifPctToDf | AddModMotifPctToDf Function (GloModAn) |
| dot-CalculateNLx | CalculateNLx Function (SeQual) |
| dot-DrawFdrEst | DrawFdrEst Function (FDREst) |
| dot-DrawFdrSegmentsXYAxis | DrawFdrSegmentsXYAxis Function (FDREst) |
| dot-DrawPolygonRange | DrawPolygonRange Function (ModAnnot) |
| dot-EstimateFdr | EstimateFdr Function (FDREst) |
| dot-ExportBamForGviz | .ExportBamForGviz Function (ModAnnot) |
| dot-ExportBigwigForGviz | .ExportBigwigForGviz Function (ModAnnot) |
| dot-ExportFastaForGviz | .ExportFastaForGviz Function (ModAnnot) |
| dot-GetCountsByDist | GetCountsByDist Function (ModAnnot) |
| dot-GetCumsumTableParamByMotif | GetCumsumTableParamByMotif Function (FDREst) |
| dot-GetModBaseCountsCategories | GetModBaseCountsCategories Function (ModAnnot) |
| dot-GetPosDistFromFeaturePos | .GetPosDistFromFeaturePos Function (ModAnnot) |
| dot-IncludeModPosInMot | IncludeModPosInMot Function (GloModAn) |
| dot-rescale | .rescale Function from seqLogo package (GloModAn) |
| DrawBarplotBothStrands | DrawBarplotBothStrands Function (GloModAn) |
| DrawContigCumulLength | DrawContigCumulLength Function (SeQual) |
| DrawDistriHistBox | DrawDistriHistBox Function (GloModAn) |
| DrawFdrEstList | DrawFdrEstList Function (FDREst) |
| DrawLogoPosNegAxes | DrawLogoPosNegAxes Function (GloModAn) |
| DrawModBaseCountsWithinFeature | DrawModBaseCountsWithinFeature Function (ModAnnot) |
| DrawModBasePropByFeature | DrawModBasePropByFeature Function (ModAnnot) |
| DrawModBasePropDistFromFeature | DrawModBasePropDistFromFeature Function (ModAnnot) |
| DrawModLogo | DrawModLogo Function (GloModAn) |
| DrawParamPerModBaseCategories | DrawParamPerModBaseCategories Function (ModAnnot) |
| ExportFilesForGViz | ExportFilesForGViz Function (ModAnnot) |
| ExtractListModPosByModMotif | ExtractListModPosByModMotif Function (GloModAn) |
| FiltContig | FiltContig Function (Filter) |
| FiltDeepSignal | FiltModDeepSignal Function (Filter) |
| FiltFdrBased | FiltFdrBased Function (Filter) |
| FiltPacBio | FiltPacBio Function (Filter) |
| FiltParam | FiltParam Function (Filter) |
| GetAssemblyReport | GetAssemblyReport Function (SeQual) importFrom base... |
| GetContigCumulLength | GetContigCumulLength Function (SeQual) |
| GetDistFromFeaturePos | GetDistFromFeaturePos Function (ModAnnot) |
| GetFdrBasedThreshLimit | GetFdrBasedThreshLimit Function (FDREst) |
| GetFdrEstListByThresh | GetFdrEstListByThresh Function (FDREst) |
| GetGenomeGRanges | GetGenomeGRanges Function (DaLoad) |
| GetGposCenterFromGRanges | GetGposCenterFromGRanges Function (DaLoad) |
| GetGRangesWindowSeqandParam | GetGRangesWindowSeqandParam Function (GloModAn) |
| GetListCountsByDist | GetListCountsByDist Function (ModAnnot) |
| GetMeanParamByContig | GetMeanParamByContig Function (GloModAn) |
| GetModBaseCountsByFeature | GetModBaseCountsByFeature Function (ModAnnot) |
| GetModBaseCountsWithinFeature | GetModBaseCountsWithinFeature Function (ModAnnot) |
| GetModRatioByContig | GetModRatioByContig Function (GloModAn) |
| GetModReportDeepSignal | GetModReportDeepSignal Function (GloModAn) |
| GetModReportPacBio | GetModReportPacBio Function (GloModAn) |
| GetSeqPctByContig | GetSeqPctByContig Function (SeQual) |
| ImportBamExtendedAnnotationTrack | ImportBamExtendedAnnotationTrack Function (ModAnnot) |
| ImportDeepSignalModFrequency | ImportDeepSignalModFrequency Function (DaLoad) |
| ImportPacBioCSV | ImportPacBioCSV Function (DaLoad) |
| ImportPacBioGFF | ImportPacBioGFF Function (DaLoad) |
| letterA | letterA Function from seqLogo package (GloModAn) |
| letterC | letterC Function from seqLogo package (GloModAn) |
| letterG | letterG Function from seqLogo package (GloModAn) |
| letterT | letterT Function from seqLogo package (GloModAn) |
| letterU | letterU Function from seqLogo package (GloModAn) |
| PredictMissingAnnotation | PredictMissingAnnotation Function (DaLoad) |
