Files in AliSajid/KINNET
Kinase INteraction NETwork Generation
.Rbuildignore
.Rprofile
.gitignore
.travis.yml
DESCRIPTION
KINNET.Rproj
LICENSE
NAMESPACE
R/assign_kinases.R
R/compare_kinased_graphs.R
R/distances.R
R/equalize_kinase_graphs.R
R/filter_peptides.R
R/make_model.R
R/pamchip_data.R
R/pamchip_data_ptk.R
R/pamchip_data_stk.R
R/probability_matrix.R
R/ptk_methods.R
R/render_kinased_graph.R
R/render_reduced_kinased_graph.R
R/stk_methods.R
R/subset_data.R
R/sysdata.rda
R/update_probability_matrix.R
README.Rmd
README.md
data-raw/data/KRSA_Mapping_PTK_sep.tsv
data-raw/data/KRSA_Mapping_STK_Separated.csv
data-raw/data/PTK_Annotation.csv
data-raw/data/RegPhos_Annotation_human.csv
data-raw/data/RegPhos_kinase_PPI_human.txt
data-raw/data/STK_Annotation.csv
data-raw/data/uka_pep2kinase_PTK.csv
data-raw/data/uka_pep2kinase_STK.csv
data-raw/internal_data.R
data-raw/kinase_interactome_gene.R
data-raw/kinase_interactome_kinase.R
data-raw/ptk_annotation.R
data-raw/ptk_probability_matrix.R
data-raw/stk_annotation.R
data-raw/stk_probability_matrix.R
man/PamchipData-PTK-class.Rd
man/PamchipData-STK-class.Rd
man/PamchipData-class.Rd
man/PamchipData_PTK.Rd
man/PamchipData_STK.Rd
man/assign_kinases.Rd
man/assign_kinases_guided.Rd
man/candidate_kinases.Rd
man/compare_kinased_graphs.Rd
man/default_parent.Rd
man/equalize_kinase_graphs.Rd
man/filter_peptides.Rd
man/fit_standardized.Rd
man/generate_posterior_probability_df.Rd
man/generate_probability_matrix.Rd
man/generate_triad_links.Rd
man/get_intersections.Rd
man/kinnet_hamming.Rd
man/kinnet_normalized_hamming.Rd
man/kinnet_normalized_shd.Rd
man/kinnet_shd.Rd
man/make_model.Rd
man/posterior.Rd
man/process_parent_child_link.Rd
man/ptk_probability_matrix_gene.Rd
man/ptk_probability_matrix_kinase.Rd
man/render_kinased_graph.Rd
man/render_reduced_kinased_graph.Rd
man/safely_add_node.Rd
man/stk_accessors.Rd
man/stk_probability_matrix_gene.Rd
man/stk_probability_matrix_kinase.Rd
man/subset_data.Rd
man/update_probability_matrix.Rd
renv.lock
renv/.gitignore
renv/activate.R
renv/settings.dcf
tests/testthat.R
tests/testthat/PTK-Test.txt
tests/testthat/STK_Test.txt
tests/testthat/test-PamchipData_PTK.R
