API for Alice-MacQueen/switchgrassGWAS
Genome Wide Association on Panicum virgatum
| Global functions | |
|---|---|
| %>% | Man page |
| advanced... | Man page |
| anno_info | Man page |
| asv_best_PC_df | Man page Source code |
| bigsnp2anno | Source code |
| check_covmat_basics | Source code |
| check_positive_definite | Source code |
| dots | Man page Source code |
| expand_cov | Man page Source code |
| get_GxE | Man page Source code |
| get_U_by_mass | Man page Source code |
| get_Ulist | Source code |
| get_best_PC_df | Man page Source code |
| get_colnames | Man page Source code |
| get_date_filename | Man page Source code |
| get_estimated_pi | Man page Source code |
| get_estimated_pi_no_collapse | Source code |
| get_lambdagc | Man page Source code |
| get_log10bf | Man page Source code |
| get_loglik | Source code |
| get_marker_df | Man page Source code |
| get_mash_metadata | Man page Source code |
| get_n_significant_conditions | Man page Source code |
| get_ncond | Man page Source code |
| get_pairwise_sharing | Man page Source code |
| get_significant_results | Man page Source code Source code |
| get_tidy_annos | Source code |
| get_top_snps | Source code |
| gff_gene | Man page |
| gff_metadata | Man page |
| labelled_stop | Source code |
| load_mash_df | Man page Source code |
| make_U_ed | Source code |
| mash2anno | Source code |
| mash_plot_Ulist | Man page Source code |
| mash_plot_covar | Man page Source code |
| mash_plot_effects | Man page Source code |
| mash_plot_manhattan_by_condition | Man page Source code |
| mash_plot_pairwise_sharing | Man page Source code |
| mash_plot_sig_by_condition | Man page Source code |
| mash_standard_run | Man page Source code |
| mt.rawp2adjp | Man page |
| multiply_list | Source code |
| pvdiv_autoSVD | Man page Source code |
| pvdiv_bigsnp2mashr | Man page Source code |
| pvdiv_bigsnp2tibble | Man page Source code |
| pvdiv_bigsnp_subset | Man page Source code |
| pvdiv_fbm_qq | Man page Source code |
| pvdiv_fbm_upset_df | Man page Source code |
| pvdiv_fdr | Man page Source code |
| pvdiv_gwas | Man page Source code |
| pvdiv_kinship | Man page Source code |
| pvdiv_lambda_GC | Man page Source code |
| pvdiv_manhattan | Man page Source code |
| pvdiv_metadata | Man page |
| pvdiv_phenotypes | Man page |
| pvdiv_qqplot | Man page Source code |
| pvdiv_results_in_folder | Man page Source code |
| pvdiv_standard_gwas | Man page Source code |
| pvdiv_subset_popgenome | Man page Source code |
| pvdiv_table_topsnps | Man page Source code |
| pvdiv_top_effects_log10p | Man page Source code |
| pvdiv_vcf_popgenome | Man page Source code |
| reorder_cormat | Man page Source code |
| round2 | Man page Source code |
| round_xy | Man page Source code |
| rqtl2anno | Source code |
| s_hat_bigsnp | Man page Source code |
| scale_cov | Man page Source code |
| theme_oeco | Man page |
| thresholdFBM | Man page Source code |
