h5_list_convert_to_dgCMatrix: Convert the matrix in an h5_list from 10x Genomics data to a...
In AllenInstitute/BarMixer: Hashed scRNA-seq demultiplexing for .h5 files
Description
Usage
Arguments
Value
View source: R/filter_rna_h5.R
Description
This is very useful for subsetting the matrix based on column names.
Usage
1
h5_list_convert_to_dgCMatrix(h5_list, target = "matrix", feature_names = "id")
Arguments
h5_list
a list object generated by running rhdf5::h5dump() on a 10x HDF5 file.
target
the group name for the sparse matrix. Default is "matrix", which is used by 10x.
feature_names
the group name in target/features to use for rownames. Must be either "id" or "name". Default is "id".
Value
a list object
AllenInstitute/BarMixer documentation built on Dec. 17, 2021, 8:42 a.m.
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Description Usage Arguments Value
View source: R/filter_rna_h5.R
Description
This is very useful for subsetting the matrix based on column names.
Usage
1 | h5_list_convert_to_dgCMatrix(h5_list, target = "matrix", feature_names = "id")
|
Arguments
h5_list |
a list object generated by running rhdf5::h5dump() on a 10x HDF5 file. |
target |
the group name for the sparse matrix. Default is "matrix", which is used by 10x. |
feature_names |
the group name in target/features to use for rownames. Must be either "id" or "name". Default is "id". |
Value
a list object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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