make_singlet_summary: Generate a summary table with the number and fraction of...
In AllenInstitute/BarMixer: Hashed scRNA-seq demultiplexing for .h5 files
Description
Usage
Arguments
Value
View source: R/hash_matrix_analysis.R
Description
Generate a summary table with the number and fraction of singlets with each HTO barcode
Usage
1
make_singlet_summary(hash_category_table, valid_htos = NULL)
Arguments
hash_category_table
A hash category table data.frame as produced by categorize_binary_hash_matrix()
valid_htos
(optional) a character vector of valid hto sequences. Default is NULL, which will use unique barcodes in hash_category_table$hto_barcode.
Value
a data.frame with hto_barcode, n_singlets, and frac_singlets.
AllenInstitute/BarMixer documentation built on Dec. 17, 2021, 8:42 a.m.
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Description Usage Arguments Value
View source: R/hash_matrix_analysis.R
Description
Generate a summary table with the number and fraction of singlets with each HTO barcode
Usage
1 | make_singlet_summary(hash_category_table, valid_htos = NULL)
|
Arguments
hash_category_table |
A hash category table data.frame as produced by categorize_binary_hash_matrix() |
valid_htos |
(optional) a character vector of valid hto sequences. Default is NULL, which will use unique barcodes in hash_category_table$hto_barcode. |
Value
a data.frame with hto_barcode, n_singlets, and frac_singlets.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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