read_h5_seurat: Read .h5 directly into a Seurat Object

In AllenInstitute/BarMixer: Hashed scRNA-seq demultiplexing for .h5 files

Description

By default, matrix data will be stored in the "RNA" assay.

Usage

read_h5_seurat(h5_file, target = "matrix", feature_names = "id", ...)

Arguments

h5_file	the path to an .h5 file in 10x Genomics format
target	A matrix object in the .h5 file with a /features/ sub-group. Default is "matrix".
feature_names	a character object specifying whether to use "id" or "name" for row.names. Default is "id".
...	Additional parameters passed to Seurat::createSeuratObject

Details

CITE-seq data will be automatically detected and stored in the "ADT" assay.

Value

a Seurat Class object

AllenInstitute/BarMixer documentation built on Dec. 17, 2021, 8:42 a.m.