read_h5_sce: Read .h5 directly into a SingleCellExperiment object
In AllenInstitute/BarMixer: Hashed scRNA-seq demultiplexing for .h5 files
Description
Usage
Arguments
Details
Value
Description
By default, matrix data will be stored in the "counts" assay.
Usage
1
read_h5_sce(h5_file, target = "matrix", ...)
Arguments
h5_file
the path to an .h5 file in 10x Genomics format
target
A matrix object in the .h5 file with a /features/ sub-group. Default is "matrix".
...
Additional parameters passed to SingleCellExperiment::SingleCellExperiment()
Details
CITE-seq data will be automatically detected and stored in the altExp called "ADT"
Value
a SingleCellExperiment Class object
AllenInstitute/BarMixer documentation built on Dec. 17, 2021, 8:42 a.m.
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Description Usage Arguments Details Value
Description
By default, matrix data will be stored in the "counts" assay.
Usage
1 | read_h5_sce(h5_file, target = "matrix", ...)
|
Arguments
h5_file |
the path to an .h5 file in 10x Genomics format |
target |
A matrix object in the .h5 file with a /features/ sub-group. Default is "matrix". |
... |
Additional parameters passed to |
Details
CITE-seq data will be automatically detected and stored in the altExp called "ADT"
Value
a SingleCellExperiment Class object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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