Man pages for AlmogAngel/xCell2
A Tool for Generic Cell Type Enrichment Analysis
| BlueprintEncode.xCell2Ref | Blueprint and ENCODE Projects Reference |
| dependencies | Access Cell Type Dependencies |
| dice_demo_ref | Subset of the DICE Reference |
| DICE_demo.xCell2Ref | Demo xCell2 Reference Object |
| genesUsed | Access Genes Used |
| ImmGenData.xCell2Ref | Immunologic Genome Project Reference |
| ImmuneCompendium.xCell2Ref | Immune Compendium Reference |
| LM22.xCell2Ref | LM22 Reference |
| mix_demo | Demo Bulk Gene Expression Data |
| MouseRNAseqData.xCell2Ref | Mouse RNAseq Data Reference |
| PanCancer.xCell2Ref | PanCancer Reference |
| params | Access Transformation Parameters |
| signatures | Access Cell Type Signatures |
| spillMat | Access Spillover Matrix |
| TabulaMurisBlood.xCell2Ref | Tabula Muris Blood Reference |
| TabulaSapiensBlood.xCell2Ref | Tabula Sapiens Blood Reference |
| TMECompendium.xCell2Ref | Tumor Microenvironment Compendium Reference |
| xCell2Analysis | Perform Cell Type Enrichment Analysis |
| xCell2GetLineage | Identify Cell Type Lineage Dependencies |
| xCell2Object-class | xCell2Object Class |
| xCell2Train | Train Custom xCell2 Reference Object |
