ImmuneCompendium.xCell2Ref: Immune Compendium Reference

In AlmogAngel/xCell2: A Tool for Generic Cell Type Enrichment Analysis

Immune Compendium Reference

Description

Pre-trained xCell2 reference for use in xCell2Analysis or extending via xCell2Train.

Usage

data(ImmuneCompendium.xCell2Ref, package = "xCell2")

Format

An xCell2Object containing:

params

Linear transformation parameters.

signatures

Gene signatures for cell types.

dependencies

Cell lineage dependencies.

spill_mat

Spillover correction matrix.

genes_used

Genes included in the reference.

Details

Immune Compendium Reference (human)

A pre-trained xCell2 reference object based on the Immune Compendium dataset for immune cell profiling.

Source

Curated by Zaitsev A (2022); trained by Angel A, et al. (2024).

See Also

xCell2Analysis and xCell2Train.

AlmogAngel/xCell2 documentation built on Jan. 24, 2025, 10:39 a.m.