TMECompendium.xCell2Ref: Tumor Microenvironment Compendium Reference

In AlmogAngel/xCell2: A Tool for Generic Cell Type Enrichment Analysis

Tumor Microenvironment Compendium Reference

Description

Pre-trained xCell2 reference object for analyzing tumor microenvironments.

Usage

data(TMECompendium.xCell2Ref, package = "xCell2")

Format

An xCell2Object containing:

params

Linear transformation parameters.

signatures

Cell-type-specific gene signatures.

dependencies

Cell type lineage dependencies.

spill_mat

Spillover correction matrix.

genes_used

Genes included in the reference.

Details

Tumor Microenvironment Compendium Reference (human)

An xCell2 reference object created from the Tumor Microenvironment Compendium dataset.

Normalized data for training can be accessed at: https://science.bostongene.com/kassandra/downloads.

Source

Curated by Zaitsev A (2022) and trained by Angel A, et al. (2024).

References

Zaitsev, A., et al. (2022). Cancer Cell, 40(8), 879-894.

See Also

xCell2Analysis and xCell2Train.

AlmogAngel/xCell2 documentation built on Jan. 3, 2025, 2:03 a.m.