DICE_demo.xCell2Ref: Demo xCell2 Reference Object

In AlmogAngel/xCell2: A Tool for Generic Cell Type Enrichment Analysis

Demo xCell2 Reference Object

Description

Pre-trained xCell2 reference object based on the DICE dataset.

Usage

data(DICE_demo.xCell2Ref, package = "xCell2")

Format

An xCell2Object containing:

params

Linear transformation parameters.

signatures

Cell-type-specific gene signatures.

dependencies

Cell type lineage dependencies.

spill_mat

Spillover correction matrix.

genes_used

Genes included in the reference.

Details

Demo xCell2 Reference Object from DICE Subset (human)

A demo xCell2 reference object derived from a subset of the DICE dataset. Suitable for demonstrating the use of xCell2Analysis.

Source

Schmiedel B et al. (2018).

See Also

xCell2Analysis for enrichment analysis, and xCell2Train for training custom references.

AlmogAngel/xCell2 documentation built on Jan. 24, 2025, 10:39 a.m.