getExperimentSamplesWithSampleLots: getExperimentSamplesWithSampleLots - Gets sample lots...

In AmundsenJunior/pfsrsdk: Functions for interacting with Platform for Science APIs

Description

getExperimentSamplesWithSampleLots - Gets sample lots assigned to experiment samples of an experiment.

Usage

getExperimentSamplesWithSampleLots(coreApi, experimentType,
  experimentBarcode, fullMetadata = FALSE, ...)

Arguments

experimentType	entity type which has the attribute metadata
experimentBarcode	barcode of entity to get
fullMetadata	get full metadata, default is FALSE
...	additional arguments passed to apiGET
coreAPI	coreApi object with valid jsessionid

Value

List of length 2, containing entity and response objects:

• entity list with sample lot names for the corresponding experiment sample barcode from a specific experiment.

• response is the entire HTTP response.

Author(s)

Natasha Mora [e-mail]

Edgardo Gutierrez [e-mail]

Examples

## Not run: 
api <- coreAPI("PATH TO JSON FILE")
login <- authBasic(api)
experimentSampleLotNames <- getExperimentSamplesWithSampleLots(login$coreApi, "experimentType", "EXP123")
logOut(login$coreApi)

## End(Not run)
Specific data can be extracted, one example is to extract the sample lot names:
## Not run: 
sampleLotName <- sapply(
    response$content[[expansion]],
    FUN = function(x) {
        x$ENTITY$Name})

## End(Not run)

AmundsenJunior/pfsrsdk documentation built on July 18, 2019, 8:10 p.m.