| aRecord | output from an example simulation run |
| rtAgeing | ageing of adults or pupae in a single population |
| rtAgeingGrid | ageing of adults or pupae in all cells on a passed grid |
| rtCalcPupaPerSexAge | calculating number of pupae in each age and sex class based... |
| rtControlGrid | first test of tsetse control |
| rtCreateGrid | create a grid array to represent a spatial, sex & age... |
| rtCreateRecord | create a record array to store a daily record for a spatial,... |
| rtDDTest | tests density dependence and outputs a plot |
| rtDensityDependence | modifies mortality according to density dependence |
| rtGetFromGrid | to access population data from the grid of [x,y,sex,age] |
| rtGetFromRecord | to access population data from a record array... |
| rtLarvalDeposition | tsetse larval deposition |
| rtLarvalDepositionGrid | tsetse larval deposition on a grid |
| rtMortality | tsetse mortality |
| rtMortalityGrid | tsetse mortality on a grid **in development** |
| rtMortalityStableSeek | seeks day1 mortality rates for F&M that give popn stability |
| rtMove | movement to neighbouring cells with reflecting area... |
| rtMoveIsland | movement to cells NESW, island model |
| rtMoveReflect | movement to cells NESW, reflecting boundaries |
| rtMoveReflectNoGo | movement with NoGo areas, to cells NESW, reflecting... |
| rtMoveReflectNoGoVeg | movement affected by vegetation and NoGo areas, to cells... |
| rtMoveReflectNoGoVegBoundary | movement affected by vegetation and NoGo areas, to cells... |
| rtPlotAgeStructure | plots age structure over multiple days 'rtPlotAgeStructure'... |
| rtPlotMapPop | plots map(s) of populations |
| rtPlotMapVeg | plots a vegetation map (raster) |
| rtPlotMeanAge | plots mean age of a popn over time |
| rtPlotMeanAgeGrid | plots mean age of M&F over multiple days and grid cells |
| rtPlotMortRatesByAge | plotting age specific mortality rates for Tsetse |
| rtPlotPop | plots popn over multiple days |
| rtPlotPopAndPupae | plots popn and pupae over multiple days |
| rtPlotPopGrid | plots popn of M&F over multiple days and grid cells |
| rtPupalAgeing | tsetse pupal ageing |
| rtPupalEmergence | tsetse pupal emergence |
| rtPupalEmergenceGrid | tsetse pupal emergence on a grid |
| rtPupalMortality | tsetse pupal mortality |
| rtPupalMortalityGrid | tsetse pupal mortality on a GRID |
| rtReadMapVeg | reads a vegetation map (raster) from a text or gridascii file |
| rtReportPhase2 | produces a report for one run NOTE! this is not used by shiny... |
| rt_runAspatial | an a-spatial tsetse population simulation, a third test of... |
| rt_runGrid | spatial tsetse population simulation with mortality varying... |
| rt_runGridTestSpread | a simple spatial tsetse population simulation, start popn in... |
| rtSetAgeStructure | setting an age structure, the abundance in each age class |
| rtSetDepositionRatesByAge | DEPRECATED setting age specific density-dependent larval... |
| rtSetDepositionRatesByAgeDI | setting age specific density-INdependent larval deposition... |
| rtSetGridFromVeg | setting a grid of anything from a vegetation grid |
| rtSetMortRatesByAge | setting age specific mortality rates for Tsetse |
| rtsetse | simulating tsetse fly populations to investigate control... |
| rtSetVegDifGrids | to return an array of grids used internally to represent... |
| rtSetVegMoveGrids | to return an array of grids used internally to represent... |
| shiftGridIslandE | shift a matrix one cell E fill empty cells with 0 for island... |
| shiftGridIslandN | shift a matrix one cell N fill empty cells with 0 for island... |
| shiftGridIslandS | shift a matrix one cell S fill empty cells with 0 for island... |
| shiftGridIslandW | shift a matrix one cell W fill empty cells with 0 for island... |
| shiftGridReflectE | shift a matrix one cell E, copy boundary to represent... |
| shiftGridReflectN | shift a matrix one cell N, copy boundary to represent... |
| shiftGridReflectS | shift a matrix one cell S, copy boundary to represent... |
| shiftGridReflectW | shift a matrix one cell W, copy boundary to represent... |
