aRecord | output from an example simulation run |
rtAgeing | ageing of adults or pupae in a single population |
rtAgeingGrid | ageing of adults or pupae in all cells on a passed grid |
rtCalcPupaPerSexAge | calculating number of pupae in each age and sex class based... |
rtControlGrid | first test of tsetse control |
rtCreateGrid | create a grid array to represent a spatial, sex & age... |
rtCreateRecord | create a record array to store a daily record for a spatial,... |
rtDDTest | tests density dependence and outputs a plot |
rtDensityDependence | modifies mortality according to density dependence |
rtGetFromGrid | to access population data from the grid of [x,y,sex,age] |
rtGetFromRecord | to access population data from a record array... |
rtLarvalDeposition | tsetse larval deposition |
rtLarvalDepositionGrid | tsetse larval deposition on a grid |
rtMortality | tsetse mortality |
rtMortalityGrid | tsetse mortality on a grid **in development** |
rtMortalityStableSeek | seeks day1 mortality rates for F&M that give popn stability |
rtMove | movement to neighbouring cells with reflecting area... |
rtMoveIsland | movement to cells NESW, island model |
rtMoveReflect | movement to cells NESW, reflecting boundaries |
rtMoveReflectNoGo | movement with NoGo areas, to cells NESW, reflecting... |
rtMoveReflectNoGoVeg | movement affected by vegetation and NoGo areas, to cells... |
rtMoveReflectNoGoVegBoundary | movement affected by vegetation and NoGo areas, to cells... |
rtPlotAgeStructure | plots age structure over multiple days 'rtPlotAgeStructure'... |
rtPlotMapPop | plots map(s) of populations |
rtPlotMapVeg | plots a vegetation map (raster) |
rtPlotMeanAge | plots mean age of a popn over time |
rtPlotMeanAgeGrid | plots mean age of M&F over multiple days and grid cells |
rtPlotMortRatesByAge | plotting age specific mortality rates for Tsetse |
rtPlotPop | plots popn over multiple days |
rtPlotPopAndPupae | plots popn and pupae over multiple days |
rtPlotPopGrid | plots popn of M&F over multiple days and grid cells |
rtPupalAgeing | tsetse pupal ageing |
rtPupalEmergence | tsetse pupal emergence |
rtPupalEmergenceGrid | tsetse pupal emergence on a grid |
rtPupalMortality | tsetse pupal mortality |
rtPupalMortalityGrid | tsetse pupal mortality on a GRID |
rtReadMapVeg | reads a vegetation map (raster) from a text or gridascii file |
rtReportPhase2 | produces a report for one run NOTE! this is not used by shiny... |
rt_runAspatial | an a-spatial tsetse population simulation, a third test of... |
rt_runGrid | spatial tsetse population simulation with mortality varying... |
rt_runGridTestSpread | a simple spatial tsetse population simulation, start popn in... |
rtSetAgeStructure | setting an age structure, the abundance in each age class |
rtSetDepositionRatesByAge | DEPRECATED setting age specific density-dependent larval... |
rtSetDepositionRatesByAgeDI | setting age specific density-INdependent larval deposition... |
rtSetGridFromVeg | setting a grid of anything from a vegetation grid |
rtSetMortRatesByAge | setting age specific mortality rates for Tsetse |
rtsetse | simulating tsetse fly populations to investigate control... |
rtSetVegDifGrids | to return an array of grids used internally to represent... |
rtSetVegMoveGrids | to return an array of grids used internally to represent... |
shiftGridIslandE | shift a matrix one cell E fill empty cells with 0 for island... |
shiftGridIslandN | shift a matrix one cell N fill empty cells with 0 for island... |
shiftGridIslandS | shift a matrix one cell S fill empty cells with 0 for island... |
shiftGridIslandW | shift a matrix one cell W fill empty cells with 0 for island... |
shiftGridReflectE | shift a matrix one cell E, copy boundary to represent... |
shiftGridReflectN | shift a matrix one cell N, copy boundary to represent... |
shiftGridReflectS | shift a matrix one cell S, copy boundary to represent... |
shiftGridReflectW | shift a matrix one cell W, copy boundary to represent... |
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