rtPlotMapPop: plots map(s) of populations

Description Usage Arguments Value Examples

Description

rtPlotMapPop plots map(s) of populations from simulation outputs i.e. a passed array of day,y,x,sex,age. Can plot a maximum of 16 days, will display the first 16 if you select more than this. For adults to start with but could be used for pupae too.

Usage

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rtPlotMapPop(aRecord, days = "all", ifManyDays = "spread", sex = "MF",
  age = "sum", title = NULL, fMaxCellVal = NULL, ext = NULL,
  verbose = FALSE)

Arguments

aRecord

array of day,y,x,sex,age

days

which days to plot, options 'all', 'final', a number >0 and <days in the simulation, or a series e.g. c(1,2) or c(4:7)

ifManyDays

days to plot if days='all' and num days > 16, Options: 'first' first 16 days, 'last' 16 days, 'firstlast' first8 and last8, 'spread' try to spread out days, e.g. if 32 it would plot 2,4,6, etc. can lead to uneven intervals.

sex

which sex to plot, 'both' or 'MF' for both in same plot, 'M' males, 'F' females, 'M&F' for separate MF plots (only available for a single day)

age

allows selection of an age range, e.g. c(1:19), c(20:120)

title

a title for the plot

fMaxCellVal

allow setting max value across multiple plots to keep colours constant

ext

allow zooming in on a region by ext=c(w,e,s,n), e.g. ext=c(10,40,10,40) ext=c(20,30,20,30)

verbose

print what it's doing

Value

raster brick used for plotting

Examples

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AndySouth/rtsetse documentation built on May 5, 2019, 6:02 a.m.