Description Usage Arguments Value Examples
rt_runAspatial
runs an a-spatial popn simulation as a test of phase 1 model components.
This differs from previous tests in being closer to Hat-trick.
~ uses age-dependent mortalities.
~ tries to start popn. at stable age structure.
rt_runAspatial was developed from rtPhase1Test3
1 2 3 4 5 6 7 8 | rt_runAspatial(iDays = 30, iMaxAge = 120, iCarryCapF = 200,
fMperF = 0.5, fStartPopPropCC = 1, iStartAdults = 200, iStartAges = 1,
iStartPupae = 200, pMortF = 0.05, pMortM = 0.05,
iMortMinAgeStart = 10, iMortMinAgeStop = 50, fMortMinProp = 0.2,
fMortOldProp = 0.3, propMortAdultDD = 0.25, pMortPupa = 0.25,
propMortPupaDD = 0.25, iPupDurF = 26, iPupDurM = 28, iFirstLarva = 16,
iInterLarva = 10, pMortLarva = 0.05, propMortLarvaDD = 0.25,
plot = FALSE, verbose = TRUE)
|
iDays |
days to run simulation |
iMaxAge |
max age of fly allowed in model (will warn if flies age past this) |
iCarryCapF |
carrying capacity of adult females |
fMperF |
numbers of males per female, default 0.5 for half as many M as F |
fStartPopPropCC |
starting population as a proportion of carrying capacity, default = 1 |
iStartAdults |
number of adults to start simulation with |
iStartAges |
spread start adults across the first n ages classes |
iStartPupae |
number of pupae to start simulation with (they get spread across sex&age) |
pMortF |
adult female mortality on day1, rates on later days are determined by following parameters. |
pMortM |
adult male mortality on day1, rates on later days are determined by following parameters. |
iMortMinAgeStart |
Age at which min death rates start. |
iMortMinAgeStop |
Age at which min death rates stop. |
fMortMinProp |
What proportion of the maximum death rate on day 0 is the minimum death rate. |
fMortOldProp |
What proportion of the maximum death rate on day 0 is the death rate after iDeathMinAgeStop. |
propMortAdultDD |
proportion of adult mortality that is density dependent |
pMortPupa |
pupal mortality per period |
propMortPupaDD |
proportion of pupal mortality that is density dependent |
iPupDurF |
days it takes pupa(F) to develop |
iPupDurM |
days it takes pupa(M) to develop |
iFirstLarva |
Age that female produces first larva |
iInterLarva |
Inter-larval period |
pMortLarva |
larval mortality per period |
propMortLarvaDD |
proportion of larval mortality that is density dependent |
plot |
whether to plot graphs |
verbose |
whether to output progress messages to console |
a list of lots:
dataframes of adult age structure over time dfRecordF & M
dataframes of adult age structure over time dfRecordPupa F & M
1 2 | tst <- rt_runAspatial()
rtPlotPopAndPupae(tst$dfRecordF, tst$dfRecordM, tst$dfRecordPupaF, tst$dfRecordPupaM)
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