seg: A segmentation file from the cbioPortal datasets
In AxelitoMartin/gnomeR: Wrangle and analyze IMPACT and TCGA mutation data
seg R Documentation
A segmentation file from the cbioPortal datasets
Description
Segmentation file provided by the processing of IMPACT sequencing using FACETS
Usage
seg
Format
A data frame with 30240 observations with 6 variables
- ID
Factor, IMPACT sample ID
- chrom
chromosome
- loc.start
start location
- loc.end
end location
- num.mark
number of probes or bins covered by the segment
- seg.mean
segment mean value, usually in log2 scale
Source
AxelitoMartin/gnomeR documentation built on March 23, 2024, 3:07 a.m.
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| seg | R Documentation |
A segmentation file from the cbioPortal datasets
Description
Segmentation file provided by the processing of IMPACT sequencing using FACETS
Usage
seg
Format
A data frame with 30240 observations with 6 variables
- ID
Factor, IMPACT sample ID
- chrom
chromosome
- loc.start
start location
- loc.end
end location
- num.mark
number of probes or bins covered by the segment
- seg.mean
segment mean value, usually in log2 scale
Source
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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