R/example.count.R

In BIGslu/kimma: Kinship In Mixed Model Analysis of RNA-seq

#' kimma example count table.
#'
#' @format A data frame with 1000 rows and 13 columns
#' \describe{
#'   \item{geneName}{character. ENSEMBL gene ID.}
#'   \item{lib1}{numeric. Raw counts in library 1.}
#'   \item{lib2}{numeric. Raw counts in library 2.}
#'   \item{lib3}{numeric. Raw counts in library 3.}
#'   \item{lib4}{numeric. Raw counts in library 4.}
#'   \item{lib5}{numeric. Raw counts in library 5.}
#'   \item{lib6}{numeric. Raw counts in library 6.}
#'   \item{lib7}{numeric. Raw counts in library 7.}
#'   \item{lib8}{numeric. Raw counts in library 8.}
#'   \item{lib9}{numeric. Raw counts in library 9.}
#'   \item{lib10}{numeric. Raw counts in library 10.}
#'   \item{lib11}{numeric. Raw counts in library 11.}
#'   \item{lib12}{numeric. Raw counts in library 12.}
#'       }
#'
#' @source \url{https://github.com/altman-lab/P259_pDC_public}
#' @references Dill-McFarland et al. 2022 Eosinophil-mediated suppression and Anti-IL-5 enhancement of plasmacytoid dendritic cell interferon responses in asthma. J Allergy Clin Immunol. 150(3):666-675. doi: 10.1016/j.jaci.2022.03.025
#' @description A limma EList data set containing normalized log2 RNA-seq counts. RNA-seq of human dendritic cells cultured with and without virus. Samples from 3 donors and a random subset of 1000 genes were selected. Counts are TMM normalized log2 counts per million (CPM).
#' @docType data
#' @name example.count
#' @keywords datasets
"example.count"