RandomEnrichment-class: An S4 class for storing 'getRandomEnrichment' function...

In BIMSBbioinfo/genomation: Summary, annotation and visualization of genomic data

Description

The resulting object stores the results of getRandomEnrichment function

Slots

orig.cnt:

number of features overlapping with query at getRandomEnrichment

rand.olap.dist:

set of number of features overlapping with randomized queries at getRandomEnrichment

log2fc:

log2 fold change calculated by dividing orig.cnt by mean(rand.olap.dist) and taking log2 of that result

p.value:

P-value assuming rand.olap.dist has a normal distribution and comparing orig.cnt with that distribution

rand.p.value:

p-value from randomization by calculation the proportion of how many times a random number of overlap exceeds the original number of overlap

See Also

getRandomEnrichment

BIMSBbioinfo/genomation documentation built on March 13, 2020, 5:28 a.m.