readBam: readBam function

Description Usage Arguments

View source: R/scoreMatrix.R

Description

given a big bam path reads the big wig file into a RleList to be used by ScoreMatrix:char,GRanges

Usage

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readBam(target, windows, rpm = FALSE, unique = FALSE, extend = 0,
  param = NULL, paired.end = FALSE, library.size = NULL, ...)

Arguments

target

target object

windows

windows

rpm

logical

unique

logical

extend

numeric

param

ScanBamParam object

paired.end

llogical

library.size

numeric

...

additional parameters


BIMSBbioinfo/genomation documentation built on Feb. 4, 2018, 12:11 p.m.