findMotifChangesMulti: findMotifChangesMulti

In BIMSBbioinfo/slimR: Short Linear Motif (SLiM) Analysis in the context of human diseases

Description

A wrapper function that runs findMotifChanges function for multiple inputs using multiple cores

Usage

findMotifChangesMulti(sequences, variants,
  motifRegex = slimR::motifRegex, nodeN = 1)

Arguments

sequences	AAStringSet object (Biostrings)
variants	A data.frame consisting of minimum four columns: 1. uniprotAccession 2.wtAA, 3.mutAA, 4.pos where pos is the mutation position in the sequence, wtAA is the wild-type amino acid (one letter code) in the sequence and mutAA is the mutant amino acid (one letter code).
motifRegex	List of slim regular expressions. By default, the built-in slimR::motifRegex from the ELM database is used.
nodeN	Number of cores needed to run the analysis (default: 1)

Value

List of data.frame objects. One data.frame per each uniprot accession

BIMSBbioinfo/slimR documentation built on Nov. 4, 2021, 6:48 a.m.